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Introduction

What is Liatir

How Liatir Works

Tauri

Data

Managing files

Tools

Overview

FastQC

fastp

seqkit

Samtools flagstat

Samtools faidx

BWA-MEM

Minimap2

BCFtools stats

BCFtools filter

SnpEff

AI

Local AI guide

AI Tools

Overview

CellTypist Annotation

Sequence Embedding

Genomic Variant Effect

Regulatory Prediction

Protein Structure Prediction

AI Models

Overview

CellTypist Local Annotation

Nucleotide Transformer v2 50M

Nucleotide Transformer v2 500M

Enformer Regulatory Prediction

Basenji2 Human Regulatory

Borzoi Mini K562 RNA-seq

ESM-2 8M Protein

Boltz-2 Local Structure & Binding

Chai-1 Local Structure

scGPT Whole-human

Geneformer V1 10M

UCE 4-layer

scFoundation 100M

Visualization

Overview

3D Structure Viewer

Genome Track Viewer

Single-cell Viewer

Pipelines

Overview

Plugins (.lia)

Get started

Overview

Get started

Bundle format

API packages

API

Overview

Plugin authoring

definePlugin

field

PluginContext

Liatir Node bridge

Root

Overview

openBrowser

invoke

.desktop

App

Events

File System

Shortcuts

Deeplinks

Notifications

Files

Drag and Drop

Network

Window

Clipboard

Utilities

.plugins

call

status

list

add

addFromBytes

remove

killJobs

.pipeline

run

.jobs

spawn

status

list

kill

clearDone

.deps

check

checkMany

.qc

fastqc

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