qc.fastqc

Liatir.qc.fastqc() runs the typed FastQC wrapper and returns a Liatir tool output object.

Signature

fastqc(args: FastqcArgs): Promise<ToolOutput>

Arguments

type FastqcArgs = {
  input: string;
  maxReads?: number;
  timeoutMs?: number;
};

Example

const output = await Liatir.qc.fastqc({
  input: '/path/to/sample.fastq.gz',
  maxReads: 100000
});

Result

The method returns a standard Liatir ToolOutput, so the result can render stats, sections, plots, and text with the same viewer components used by native tools.