scFoundation 100M

scFoundation is a large single-cell foundation model candidate for expression representation and downstream cell-state analysis.

What it does

scFoundation is designed to learn from large-scale single-cell expression data. In Liatir it is tracked as a future option for embeddings and related single-cell analysis workflows.

Current status in Liatir

This model is visible as a preview. Liatir does not expose install or run controls yet because the runtime, checkpoint management, and output validation need a dedicated implementation.

Expected inputs

• Single-cell expression matrix or AnnData .h5ad file.
• Gene metadata.
• Optional cell metadata for downstream analysis.

Expected outputs

• Cell embeddings or model representations.
• Summary tables.
• Provenance linked to the exact model and parameters.

Hardware and installation

This is a large model family. It should be treated as a separate, optional runtime box and should not be bundled into the Liatir core app.

Official source

• scFoundation on GitHub